{"id":27,"date":"2024-01-24T17:51:44","date_gmt":"2024-01-24T17:51:44","guid":{"rendered":"https:\/\/labs.bio.cmu.edu\/henninger\/?page_id=27"},"modified":"2026-09-10T14:11:48","modified_gmt":"2026-09-10T14:11:48","slug":"publications","status":"publish","type":"page","link":"https:\/\/labs.bio.cmu.edu\/henninger\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"
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PUBLICATIONS<\/p>\n<\/div><\/div>\n<\/div>\n<\/div>\n<\/div>\n\n

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For a full list of publications, please see Google Scholar.<\/a><\/span><\/h3>\n<\/div><\/div>\n\n

Select publications<\/h3>\n

(*denotes co-first authorship, \u2020 denotes co-corresponding authors<\/span>)<\/p>\n<\/div><\/div>\n\n

Active RNA synthesis patterns nuclear condensates (preprint)
<\/strong>S.F. Banani*, A. Goychuk*, P. Natarajan*, M.M. Zheng*, G. Dall'Agnese, \u00a0J.E. Henninger\u2020<\/span><\/strong>, M. Kardar\u2020<\/span>,\u00a0 R.A. Young\u2020, A.K. Chakraborty\u2020<\/span>. bioRxiv<\/i>, doi: 10.1101\/2024.10.12.614958<\/a> (2024)<\/strong><\/p>\n

An RNA-centric view of transcription and genome organization.
J.E. Henninger <\/strong>& R.A. Young. Molecular Cell<\/em>, doi: 10.1016\/j.molcel.2024.08.021<\/a> (2024)<\/strong><\/p>\n

Transcription factors interact with RNA to regulate genes.<\/strong>
O. Oksuz*, J. E. Henninger*<\/strong>, R. Warneford-Thomson, M. M. Zheng, H. Erb, A. Vancura, K. J. Overholt, S. W. Hawken, S. F. Banani, R. Lauman, L. N. Reich, A. L. Robertson, N. M. Hannett, T. I. Lee, L. I. Zon, R. Bonasio, R. A. Young, \u00a0<\/strong>Molecular Cell<\/i>, doi: 10.1016\/j.molcel.2023.06.012<\/a> (2023).<\/p>\n

Genetic variation associated with condensate dysregulation in disease.<\/strong>
S. F. Banani*, L. K. Afeyan*, S. W. Hawken*, J. E. Henninger<\/strong>, A. Dall\u2019Agnese, V. E. Clark, J. M. Platt, O. Oksuz, N. M. Hannett, I. Sagi, T. I. Lee, R. A. Young, Developmental Cell<\/i>, doi: 10.1016\/j.devcel.2022.06.010<\/a> (2022).<\/p>\n

RNA in formation and regulation of transcriptional condensates.<\/strong>
P. A. Sharp, A. K. Chakraborty, J. E. Henninger<\/strong>, R. A. Young, RNA<\/i>, doi: 10.1261\/rna.078997.121<\/a> (2022).<\/p>\n

Resistance to inflammation underlies enhanced fitness in clonal hematopoiesis.<\/strong>
S. Avagyan*, J. E. Henninger*<\/strong>, W. P. Mannherz, M. Mistry, J. Yoon, S. Yang, M. C. Weber, J. L. Moore, L. I. Zon, Science<\/i>, doi:10.1126\/science.aba9304<\/a> (2021).<\/p>\n

RNA-mediated feedback control of transcriptional condensates.<\/strong>
J. E. Henninger*<\/strong>, O. Oksuz*, K. Shrinivas*, I. Sagi, G. LeRoy, M. M. Zheng, J. O. Andrews, A. V. Zamudio, C. Lazaris, N. M. Hannett, T. I. Lee, P. A. Sharp, I. I. Ciss\u00e9, A. K. Chakraborty, R. A. Young, Cell<\/i> 10.1016\/j.cell.2020.11.030<\/a> (2021).<\/p>\n

Pol II phosphorylation regulates a switch between transcriptional and splicing condensates.<\/strong>
Y. E. Guo*, J. C. Manteiga*, J. E. Henninger<\/strong>, B. R. Sabari, A. Dall\u2019Agnese, N. M. Hannett, J.-H. Spille, L. K. Afeyan, A. V. Zamudio, K. Shrinivas, B. J. Abraham, A. Boija, T.-M. Decker, J. K. Rimel, C. B. Fant, T. I. Lee, I. I. Cisse, P. A. Sharp, D. J. Taatjes, R. A. Young, Nature<\/i>, 10.1038\/s41586-019-1464-0<\/a> (2019).<\/p>\n

Clonal fate mapping quantifies the number of haematopoietic stem cells that arise during development.<\/strong>
J. Henninger<\/strong>, B. Santoso, S. Hans, E. Durand, J. Moore, C. Mosimann, M. Brand, D. Traver, L. Zon, Nature Cell Biology<\/i>, 10.1038\/ncb3444<\/a> (2017).<\/p>\n<\/div><\/div>\n<\/div>\n<\/div>\n<\/div>","protected":false},"excerpt":{"rendered":"","protected":false},"author":21,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-27","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/labs.bio.cmu.edu\/henninger\/wp-json\/wp\/v2\/pages\/27","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.bio.cmu.edu\/henninger\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.bio.cmu.edu\/henninger\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.bio.cmu.edu\/henninger\/wp-json\/wp\/v2\/users\/21"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.bio.cmu.edu\/henninger\/wp-json\/wp\/v2\/comments?post=27"}],"version-history":[{"count":26,"href":"https:\/\/labs.bio.cmu.edu\/henninger\/wp-json\/wp\/v2\/pages\/27\/revisions"}],"predecessor-version":[{"id":585,"href":"https:\/\/labs.bio.cmu.edu\/henninger\/wp-json\/wp\/v2\/pages\/27\/revisions\/585"}],"wp:attachment":[{"href":"https:\/\/labs.bio.cmu.edu\/henninger\/wp-json\/wp\/v2\/media?parent=27"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}